Opqua

opqua (opkua, upkua) [Chibcha/muysccubun]

• I. noun. ailment, disease, illness

• II. noun. cause, reason [for which something occurs]

Taken from D. F. Gómez Aldana’s muysca-spanish dictionary.

Opqua has been used in-depth to study pathogen evolution across fitness valleys. Check out the peer-reviewed preprint on biorXiv, now peer-reviewed.

Opqua is developed by Pablo Cárdenas in collaboration with Vladimir Corredor and Mauricio Santos-Vega. Follow their science antics on Twitter at @pcr_guy and @msantosvega.

Opqua is available on PyPI and is distributed under an MIT License.

Contents

• About
  • Opqua is an epidemiological modeling framework for pathogen population genetics and evolution.
  • How Does Opqua Work?
• Requirements and Installation
• Usage
  • Minimal example
  • Example Plots
• Tutorials
  • Basic usage
  • Evolution
  • Interventions
  • Metapopulation
  • Vital dynamics
• Model Documentation
  • Model class attributes
  • Model class methods list
  • Detailed Model documentation
• API
  • opqua package